Your first pic shows juvenile foliage. As the juniper starts maturing it puts out adult foliage that your second picture shows. Totally normal. Removing the adult foliage keeps the plant in a juvenile stage longer and sets back and weakens the plant. Most bonsai practitioners prefer the adult foliage for the appearance of age it gives, the long term health of the tree, and last but not least, the comfort of being able to work on a tree without being constantly pricked.